Pi-stacking better without the aromatics?

08 July 2011

Scientists in the US have discovered that electrons confined to their double bonds can sometimes deliver stronger pi-stacking interactions than those roaming free in aromatic systems. The discovery could have a big impact on the design of receptors and supramolecular assemblies that rely on delocalised systems, they say.

Pi-stacking interactions are usually thought of as occurring between aromatic rings, and such interactions along with anion-pi and cation-pi interactions are often collectively referred to as 'aromatic interactions'.

Now, Steven Wheeler and colleagues at Texas A&M University have shown, using computational chemistry, that the monomer aromaticity is not necessary in aromatic interactions, and it can even hinder aromatic interactions in some cases.1 'The term "aromatic interactions" is really a misnomer,' says Wheeler 'Or at least it implies too strict a definition of these interactions.'

Wheeler explains that nature seems to favour pi-stacking interactions involving aromatic systems for example in aromatic amino acid interactions and DNA base stacking. However, he and his team believe this to be due more to the stability of the monomers, rather than strong pi-stacking interactions. 'Although mimicking nature is often fruitful, in this case it might be that the natural prevalence of aromatic rings in pi-stacking interactions is a side-effect of other factors, not a driving force itself,' he says.

By analysing computed stacking energies that the team calculated for a range of pi-stacking systems, they concluded that stacking interactions involving non-aromatic polyenes are as favourable as, if not more favourable than, interactions among equivalent aromatic species. 'Employing such non-aromatic polyenes in supramolecular applications should be advantageous,' Wheeler says.

'The Wheeler paper is a major step forward in understanding,' says Paul von Rague' Schleyer, an expert in computational studies of aromaticity at the University of Georgia in Athens, US. 'It builds on and extends our work on stacking interactions of three to nine membered rings2, which anticipated the present findings and conclusions at least to some degree,' he adds.

David Sherrill, a leader in the field of computational studies of stacking interactions, from the Georgia Institute of Technology in Atlanta, US, says: 'What this paper seems to show is that in some cases pi-pi interactions can be enhanced by breaking the aromaticity to yield localised pi orbitals. This is a big surprise, and I think most of the community would not have expected that result,' he says. 'It is commonly the case that when one is making some supramolecular systems, the presence of an aromatic interaction is considered the favourable recognition element, and it still is. But now, I think we can broaden our view to look at a wider variety of these recognition elements,' he adds.

Even though this is a theoretical study, Wheeler explains that many research groups have devised ways of measuring stacking free energies experimentally. 'These molecular probes are typically used to measure the effect of substituent or heteroatoms on pi-stacking interactions,' he says. 'I think that some of these probes could be adapted to directly measure the stacking free energy of two phenyl rings versus a phenyl ring and a non-aromatic cyclic polyene.'

Mike Brown


  1. Hello there,
    I have found your blog, which I really like it. Enjoyed to read your posts, hope you will continue it.
    I was wondering if you would be interested in sharing your posts and ideas on Glipho? It's a quite new social publishing platform for bloggers, where you can connect to every social network accounts.

  2. I am much pleased with your work. You put very helpful information. I just want to thank you for sharing your information and your blog is simple but attractive.
    The biggest advantages of Chemist. But guidemytreatment is providing the drugs at low cost and high quality. Then you have to wait until the ordered medications are delivered to your place.
    Chemist in Noida
    Bariatric Surgeon in South Delhi

  3. This comment has been removed by the author.

  4. Here you can find more Organic Chemical Synthesis, BOC Sciences provides a wide variety of custom services which range from bulk compounds to specialty species in the pharmaceutical, agrochemical, and biotechnology industries. please visit http://www.bocsci.com. chemical synthesis drug design drug development.

  5. I like the site very much. It broads my mind.
    Toshiba PVT-375BT

  6. Great article with excellent idea! I appreciate your post.
    Samadhan Agrotech &amp


  7. Dear Sir/ Madam

    Do you need a quick long or short term loan with a relatively low interest rate as low as 2%? We offer Xmas loan, business loan, personal loan, home loan, auto loan, student loan, debt consolidation loan, Business loan e.t.c no matter the amount needed apply
    7.AMOUNT NEEDED..........
    8.LOAN DURATION:.........
    9.PURPOSE OF LOAN..........
    12.YOUR MONTHLY INCOME..........
    13.MODE OF REPAYMENT:..........,
    The Linenhall,
    32-38 Linenhall Street
    BT2 8BG , Belfast
    United Kingdom

    (Field work)(On Roaming) +91828746096

    DIRECTORS Dr. Astrid JUNGE (Chairman), Alhaji D.N.Dangoze, (Vice Chairman), Pastor F C. Kumayor, Dr. Adam Smith Chief Wolfgang NIERSBACH (Director) Finance, Dr James Kelly, Steffi JONES (Secretary), Helmut SANDROCK
    Director) Finance, Dr James Kelly, Steffi JONES (Secretary), Helmut SANDROCKzz

  8. Thank you for the helpful post. I found your blog with Google and I will start following. Hope to see new blogs soon. Visit: Chemistry